XYClone® & XYRCOS® Articles

Below is a tabbed list of XYClone and XYRCOS  publications. If you would like a copy of any of the articles listed as "Available", please email webmaster [AT] hamiltonthorne [DOT] com. You may also download a PDF file of publication list.

You may also browse and search the collection of XYClone/XYRCOS articles on the Pubmed website.

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XYClone & XYRCOS Publications by Year

Available? Reference
Yes Kiyonari H, Kaneko M, Abe T, Shiraishi A, Yoshimi R, Inoue K, Furuta Y. Targeted Gene Disruption in a Marsupial, Monodelphis Domestica, by CRISPR/Cas9 Genome Editing. Cell Press. 2021 July 21: [1p.]. doi:https://doi.org/10.1016/j.cub.2021.06.056. Open Access Article
Yes Morita K, Hatanaka Y, Ihashi S, Asano M, Miyamoto K, Matsumoto K. Symmetrically Dimethylated Histone H3R2 Promotes Global Transcription During Minor Zygotic Genome Activation in Mouse Pronuclei. Sci Rep. 2021 May 12; 11(10146): [1p.]. doi: https://doi.org/10.1038/s41598-021-89334-w. Open Access Article
Yes Nedved BT, Freckelton ML, Hadfield MG. Laser ablation of the Apical Sensory Organ of Hydroides Elegans (Polychaeta) Does Not Inhibit Detection of Metamorphic Cues. BioRXiv. 2021 Jan. 25: 1-16. doi: https://doi.org/10.1101/2021.01.23.427931. Open Access Article 
No Stepien BK, Vaid S, Naumann R, Holtz A, Huttner WB. Generation of Interspecies Mouse-rat Chimeric Embryos by Embryonic Stem (ES) Cell Microinjection. Star Protocols. 2021 June 18; 2 (2): doi:https://doi.org/10.1016/j.xpro.2021.100494.
No Xu J, Shu Y, Yao G, Zhang Y, Niu W, Zhang Y, Ma X, Jin H, Zhang F, Shi S, Wang Y, Song W, Dai S, Cheng L, Zhang X, Xie W, Hsueh AJ, Sun Y. Parental Methylome Reprogramming in Human Uniparental Blastocysts Reveals Germline Memory Transition. Genome Res. 2021 July 30: [1p.]. doi: 10.1101/gr.273318.120.

Available? Reference
Yes Abe T, Inoue K, Furuta Y, Kiyonari H. Pronuclear Microinjection During S-Phase Increases the Efficiency of CRISPR-Cas9-Assisted Knockin of Large DNA Donors in Mouse Zygotes. Cell Reports. 2020 May 19; 31(7): 1-13. doi:https://doi.org/10.1016/j.celrep.2020.107653. Open Access Article
Yes Oda H, Akiyama-Oda Y. The Common House Spider Parasteatoda Tepidariorum. EvoDevo. 2020 March 20; 11(6): 1-7. doi: https://doi.org/10.1186/s13227-020-00152-z. Open Access Article
Yes Trackenberg SN, Richardson EL, Allen JD. Effects of Embryo Energy, Egg Size, and Larval Food Supply on the Development of Asteroid Echinoderms. Ecology and Evolution. 2020 July 8; doi: https://doi.org/10.1002/ece3.6511. Open Acess Article

Available? Reference
No Aguilar Calegare BF, Azzolini A, da Silva Vallim JR, Lo Turco EG, Tempaku PF, da Silva VC, Tufik S, D'Almeida V. Sleep Deprivation Decreases the Reproductive Capacity by Affecting the Arrival of Morulas in the Uterus. Genesis. 2019 Dec. 09: [1p.]. doi:https://doi.org/10. 1002/dvg.23350.
Yes Kalkan T, Bornelöv S, Mulas C, Diamanti E, Lohoff T, Ralser M, Middelkamp S, Lombard P, Nichols J, Smith A. Complementary Activity of ETV5, RBPJ, and TCF3 Drives Formative Transition from Naive Pluripotency. Cell Stem Cell. 2019 April 25; 24(5): 785-801. doi:https://doi.org/10.1016/j.stem.2019.03.017. Open Access Article
Yes Wong CY, Mills JK. Cell Extraction Automation in Single Cell Surgery using the Displacement Method. Biomedical Microdevices. 2019 March 09: 2-16. Open Access Article
Yes Yang C, Zheng H, Moussa M, Amin A, Huang J, El-Sayed A, Shang J, Liu Q. Effects of Laser Zona Thinning and Artificial Blastocoel Collapse on the Cryosurviving and Hatching of Buffalo (Bubalus bulalis) Blastocysts of Different Ages. Theriogenology. 2019 Nov. 18: 1-4. doi: https://doi.org/10.1016/j.theriogenology.2019.11.015.

Available? Reference
Yes Bowling S, Di Gregorio A, Sancho M, Pozzi S, Aarts M, Signore M, Schneider MD, Barbera JPM, Gil J, Rodriguez TA. P53 and mTOR Signalling Determine Fitness Selection Through Cell Competition During Early Mouse Embryonic Development. Nature Communications. 2018 May 02; 9(1763):1-12. doi:10.1038/s41467-018-04167-y. Open Access Article
No Davidson LM, Liu Y, Griffiths T, Jones C, Coward K. Laser technology in the assisted reproductive technology laboratory: a narrative review. Reproductive Biomedicine Online. 2018 Dec 20: 1-35. doi:https://doi.org/10.1016/j.rbmo.2018.12.011.
No Dannenberg LC, Seaver EC. Regeneration of the germline in the annelid Capitella teleta. Developmental Biology. 2018 May 7; 440:74-87. doi: https://doi.org/10.1016/j.ydbio.2018.05.004.
No Gassler J, Flyamer IM, Tachibana K. Single-nucleus Hi-C of mammalian oocytes and zygotes. Methods in Cell Biology. 2018 April 30: [1p.]. doi:https://doi.org/10.1016/bs.mcb.2018.03.032.
No Huang Z, Liu J, Gao L, Zhuan Q, Luo Y, Zhu S, Lei K, Fu X. The Impacts of Laser Zona Thinning on Hatching and Implantation of Vitrified-Warmed Mouse Embryos. Lasers in Medical Science. 2018 Dec 13: 1-7. doi:https://doi.org/10.1007/s10103-018-2681-8.
Yes Martin, N. P., Myers, P., Goulding, E., Chen, S. H., Walker, M., Porter, T. M., Van Gorder, L., Mathew, A., Gruzdev, A., Scappini, E., Romeo, C. Laser-assisted Lentiviral Gene Delivery to Mouse Fertilized Eggs. J. Vis. Exp. (141), e58327, doi:10.3791/58327 (2018). Open Access Video
No Wang QQ, Zhang YM, Zhong X, Li JW, XR A, Hou J. Dimethylated Histone H3 Lysine 9 is Dispensable for the Interaction Between Developmental Pluripotency-Associated Protein 3 (Dppa3) and Ten-Eleven Translocation 3 (Tet3) in Somatic Cells. Reproduction, Fertility and Development. 2018 Aug 13: [1p.]. doi:https://doi.org/10.1071/RD18062.

Available? Reference System
No Auerbach W, DeChiara TM. Injecting Embryonic Stem Cells into Eight-Cell-Stage Mouse Embryos. Cold Spring Harb Protoc. 2017 Sept; 2017(9): [1p.]. doi:10.1101/pdb.prot094367. XYClone
No Henry JQ, Lyons DC, Perry KJ, Osborne CC. Establishment and Activity of the D Quadrant Organizer in the Marine Gastropod Crepidula Fornicata. Developmental Biology. 2017 Sept 6: [1p.]. doi: https://doi.org/10.1016/j.ydbio.2017.09.003. Open Access Article  XYClone
No Huang Z, Danshina PV, Mohr K, Qu W, Goodson SG, O'Connell TM, O'Brien DA. Sperm function, protein phosphorylation and metabolism differ in mice lacking successive sperm-specific glycolytic enzymes. Biology Reproduction. 2017 Aug 28:[1p.]. doi: https://doi.org/10.1093/biolre/iox103. Open Access Article XYClone
Yes Sepulveda-Rincon LP, Islam N, Marsters P, Campbell BK, Beaujean N, Maalouf WE. Embryo cell allocation patterns are not altered by biopsy but can be linked with further development. Reproduction Research. 2017; 154: 807-814. doi: 10.1530/REP-17-0514. XYClone
Yes Smith ZD, Shi J, Gu H, Donaghey J, Clement K, Cacciarelli D, Gnirke A, Michor F, Meissner A. Epigenetic Restriction of Extraembryonic Lineages Mirrors the Somatic Transition to Cancer. 2017 Sept 28; 549(7673): 543–547. doi:10.1038/nature23891. XYClone
Yes
Yamada M, Egli D. Developmental Potential of Developmentally Compromised Postovulatory Aged Mouse Oocytes. Stem Cell Reports. 2017 Feb 23; 8 (3). doi: http://dx.doi.org/10.1016/j.stemcr.2017.01.020. Open Access Article.
 XYClone

 

 

 

Available? Reference System
Yes Calabrese GM, Mesner LD, Stains JP, Tommasini SM, Horowitz MC, Rosen CJ, Farber CR. Integrating GWAS and Co-expression Network Data Identifies Bone Mineral Density Genes SPTBN1 and MARK3 and an Osteoblast Functional Module. CellSystems. 2016 Nov 17; 4: 1-14. doi:http://dx.doi.org/10.1016/j.cels.2016.10.014. Open Access Article XYClone
Yes Nawal A, Smith PT, Catt S. Effect of Chemically Defined Lipid Molecules On Blastocyst Development And Outgrowth. Int J Anat Res. 2016 Sept 29; 4(4): 2950-58. doi: 10.16965/ijar.2016.380. Open Access Article XYClone
Yes Niwa H. Investigation of the Cellular Reprogramming Phenomenon Referred to as Stimulus-triggered Acquisition of Pluripotency (STAP). 2016 June 13; 6(28003): 1-10. doi: 10.1038/srep28003. Open Access Article XYClone
Yes Sanmee U, Piromlertamorn W, Vutyavanich T. The effect of the site of laser zona opening on the complete hatching of mouse blastocysts and their cell numbers. CERM. 2016 Sept 22; 43(3): 152-156. doi:https://doi.org/10.5653/cerm.2016.43.3.152. Open Access Article XYClone
Yes Siripattarapravat K, Prukudom S, Cibelli J. Method for Somatic Cell Nuclear Transfer in Zebrafish. Methods in Cell Biology. 2016 May 24; 135: 245-257. doi:https://doi.org/10.1016/bs.mcb.2016.04.022. XYClone
Yes Strassert JFH, Mikaelyan A, Woyke T, Brune A. Genome Analysis of ‘Candidatus Ancillula Trichonymphae’, First Representative of a Deep-Branching Clade of Bifidobacteriales, Strengthens Evidence for Convergent Evolution in Flagellate Endosymbionts. Society for Applied Microbiology. 2016 August 12; 8 (5): 865-873. doi: https://doi.org/10.1111/1758-2229.12451. Open Access Article XYClone
Yes Wong CY, Mills JK. Automation and optimization of multi-pulse laser zona drilling of mouse embryos during embryo biopsy.IEEE. 2016 May 19; PP(99):[1p.]. doi: 10.1109/TBME.2016.2571060.
XYClone
Yes Yamaguchi E, Dannenberg L, Amiel A, Seaver E. Regulative capacity for eye formation by first quartet micromeres of the polychaete Capitella teleta. Developmental Biology; 406(2016): 119-130. doi:10.1016/j.ydbio.2015.12.009. Open Access Article
XYClone

 

 

 

Available? Reference
System
Yes
Akutsu H, M, Kanzaki S, Sugawara T, Ohkura T, Nakamura N, Yamazaki-Inoue M, Miura T, Vemuri MC, Rao MS, Miyado K, Umezawa A. Xenogeneic-free defined conditions for derivation and expansion of human embryonic stem cells with mesenchymal stem cells, Regenerative Therapy, Volume 1, June 2015, Pages 18-29. Open Access Article
XYClone
Yes
Alexandrova S, Kalkan T, Humphreys P, Riddell A, Scognamiglio R, Trumpp A, Nichols J. Selection and dynamics of embryonic stem cell integration into early mouse embryos. Development. 2015 Nov 19. pii: dev.124602. [Epub ahead of print] PubMed PMID: 26586221. Open Access Article
XYClone
Yes Amri A, Abdullah R, Embong W. Developmental Potential of Mouse Single Blastomere Derived from Isolated 2-, 4- and 8- Cell Embryos into Blastocyst and Inner Cell Mass (ICM) Outgrowths. Sains Malaysiana. 2015 Oct 6; 45(4): 575-580. Open Access Article. XYClone
Yes
Campos-Chillon F, Mancino J, Barcelo M, Altermatt JL. Progress in genotyping in vitro‐produced embryos: are we close? Proceedings, Applied Reproductive Strategies in Beef Cattle. 2015, Aug 17-18;pp258-265. Open Access Article
XYRCOS
Yes Matrone G, Wilson KS, Maqsood S, Mullins JJ, Tucker CS, Denvir MA. CDK9 and Its Repressor LARP7 Modulate Cardiomyocyte Proliferation and Response to Injury in the Zebrafish Heart. Journal of Cell Science (2015). 2015 Oct 29; 128: 4560-4571. doi:10.1242/jcs.175018. Open Access Article XYClone
Yes
Moran S, Chi T, Prucha MS, Ahn KS, Connor-Stroud F, Jean S, Gould K, Chan AWS. Germline transmission in transgenic Huntington’s disease monkeys, Theriogenology, Available online 25 March 2015.
XYClone
No
Rao BS, Mahesh YU, Suman K, Charan KV, Nath R, Rao KR. Meiotic maturation of oocytes recovered from the ovaries of Indian big cats at postmortem. In Vitro Cell Dev Biol Anim. 2015 Jan;51(1):19-25. doi: 10.1007/s11626-014-9802-x. Epub 2014 Aug 15. PubMed PMID: 25124872
XYClone
Yes Wong CY, Mills JK. Multi-Pulse laser ablation modeling with applications to automated zona removal. 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Milan. IEEE. 2015: 2567-2570. doi: 10.1109/TBME. 2016.2571060. XYClone

Available? Reference
System
Yes Li Z, Lu H, Yang W, Yong J, Zhang Z, Zhang K, Deng H, Xu Y, Mouse SCNT ESCs Have Lower Somatic Mutation Load Than Syngeneic iPSCs, Stem Cell Reports, Available online 27 March 2014, ISSN 2213-6711. Open Access Article
XYClone
Yes Matrone G, Maqsood S, Taylor J, Mullins JJ, Tucker CS., Denvir MA. Targeted Laser Ablation of the Zebrafish Larval Heart Induces Models of Heart Block, Valvular Regurgitation, and Outflow Tract Obstruction.  Zebrafish. Epub ahead of print. doi:10.1089/zeb.2014.1027.
XYClone
Yes Woods SE, Qi P, Rosalia E, Chavarria T, Discua A, Mkandawire J, Fox JG, García A. Laser-assisted in vitro fertilization facilitates fertilization of vitrified-warmed C57BL/6 mouse oocytes with fresh and frozen-thawed spermatozoa, producing live pups. PLoS One. 2014 Mar 11;9(3):e91892. doi: 10.1371/journal.pone.0091892. eCollection 2014. PubMed PMID: 24618785; PubMed Central PMCID: PMC3950285.. Open Access Article
XYClone

Available? Reference
System
Yes Amiel AR, Henry JQ, Seaver EC. An organizing activity is required for head patterning and cell fate specification in the polychaete annelid Capitella teleta: New insights into cell-cell signaling in Lophotrochozoa. Dev Biol. 2013 Apr 19. doi:pii: S0012-1606(13)00191-7. 10.1016/j.ydbio.2013.04.011. [Epub ahead of print] PubMed PMID: 23608454. Open Access Article
XYClone
Yes Chailert C, Sanmee U, Piromlertamorn W, Samchimchom S, Vutyavanich T. Effects of partial or complete laser-assisted hatching on the hatching of mouse blastocysts and their cell numbers. Reprod Biol Endocrinol. 2013 Mar 19;11(1):21. [Epub ahead of print] PubMed PMID: 23510434.
XYClone
No Choi, I., Zhu, J., Campbell, K. The combined treatment of calcium ionophore with strontium improves the quality of ovine SCNT embryo development. Zygote, 21(2), 139-150. doi:10.1017/S0967199412000470. XYClone
Yes Cocero MJ, Sánchez P, Folch J,  Lahoz B,  Calvo JH,  Quintín F,  Sevilla E,  Alabart JL. Laser-assisted embryo biopsy allows preimplantational genetic diagnosis without decreasing embryo survival in sheep. XV Jornadas sobre Producción Animal, Zaragoza 14 y 15 de mayo de 2013 2013 pp. 371-373. (Spanish, abstract in English) Available Online
XYClone
Yes Hatanaka Y, Shimizu N, Nishikawa S, Tokoro M, Shin SW, Nishihara T, Amano T, Anzai M, Kato H, Mitani T, Hosoi Y, Kishigami S, Matsumoto K. GSE Is a Maternal Factor Involved in Active DNA Demethylation in Zygotes. PLoS One. 2013;8(4):e60205. doi: 10.1371/journal.pone.0060205. Epub 2013 Apr 1. PubMed PMID: 23560077.
XYClone
Yes Hornick JE, Duncan FE, Shea LD, Woodruff TK. Multiple follicle culture supports primary follicle growth through paracrine-acting signals. Reproduction. 2013 Jan 8;145(1):19-32. doi: 10.1530/REP-12-0233. Print 2013. Epub 2012 Oct 29 PubMed PMID: 23108112.
XYClone
Yes Ishizuka Y, Nishimura M, Matsumoto K, Miyashita M, Takeo T, Nakagata N, Hosoi Y, Anzai M. The influence of reduced glutathione in fertilization medium on the fertility of in vitro-matured C57BL/6 mouse oocytes. Theriogenology. 2013 Aug 2.  doi:pii: S0093-691X(13)00263-X. 10.1016/j.theriogenology.2013.07.002. [Epub ahead of print] PubMed PMID: 23916252
XYClone
Yes Jiao ZX, Woodruff TK. Detection and quantification of maternal-effect gene transcripts in mouse second polar bodies: potential markers of embryo developmental competence. Fertil Steril. 2013 Mar 2. doi:pii:S0015-0282(13)00259-8. 10.1016/j.fertnstert.2013.02.003. [Epub ahead of print] PubMed PMID: 23465709
XYClone
Yes Li MW, Kinchen KL, Vallelunga JM, Young DL, Wright KD, Gorano LN, Wasson K, Lloyd K. Safety, efficacy and efficiency of laser assisted IVF in subfertile mutant mouse strains. Reproduction. 2013 Jan 11. [Epub ahead of print] PubMed PMID: 23315689.
XYClone
Yes Matrone G, Taylor JM, Wilson KS, Baily J, Love GD, Girkin JM, Mullins JJ, Tucker CS, Denvir MA. Laser-targeted ablation of the zebrafish embryonic ventricle: A novel model of cardiac injury and repair. Int J Cardiol. 2013 Jul 17. doi:pii: S0167-5273(13)01117-0. 10.1016/j.ijcard.2013.06.063. [Epub ahead of print] PubMed PMID: 23871347 Open Access Article
XYClone
Yes Paull D, Emmanuele V, Weiss KA, Treff N, Stewart L, Hua H, Zimmer M, Kahler DJ, Goland RS, Noggle SA, Prosser R, Hirano M, Sauer MV, Egli D. Nuclear genome transfer in human oocytes eliminates mitochondrial DNA variants. Nature. 2013 Jan 31;493(7434):632-7. doi: 10.1038/nature11800. Epub 2012 Dec 19. PubMed PMID: 23254936.
LYKOS (research use)
Yes Putkhao K, Kocerha J, Cho IK, Yang J, Parnpai R, Chan AW. Pathogenic Cellular Phenotypes are Germline Transmissible in a Transgenic Primate Model of Huntington's Disease. Stem Cells Dev. 2013 Jan 15. [Epub ahead of print] PubMed PMID: 23190281
XYClone
Yes Tachibana M, Amato P, Sparman M, Gutierrez NM, Tippner-Hedges R, Ma H, Kang E, Fulati A, Lee HS, Sritanaudomchai H, Masterson K, Larson J, Eaton D, Sadler-Fredd K, Battaglia D, Lee D, Wu D, Jensen J, Patton P, Gokhale S, Stouffer RL, Wolf D, Mitalipov S. Human Embryonic Stem Cells Derived by Somatic Cell Nuclear Transfer. Cell. 2013 May 15. doi:pii: S0092-8674(13)00571-0. 10.1016/j.cell.2013.05.006. [Epub ahead of print] PubMed PMID: 23683578 Open Access Article
XYClone
Yes Taylor JM, Girkin JM, Love GD. High-resolution 3D optical microscopy inside the beating zebrafish heart using prospective optical gating. Biomed Opt Express. 2012 Dec 1;3(12):3043-53. doi: 10.1364/BOE.3.003043. Epub 2012 Oct 31. PubMed PMID: 23243558; PubMed Central PMCID: PMC3521314.
XYClone
Yes Yamaguchi E, Seaver EC. The importance of larval eyes in the polychaete Capitella teleta: effects of larval eye deletion on formation of the adult eye. Invertebr Biol December 2013 132(4) 352-367. doi:10.1111/ivb.1203. Epub 12 SEP 2013. Open Access Article
XYClone

Available? Reference
System
Yes Alliegro MC, Hartson S, Alliegro MA. Composition and dynamics of the nucleolinus, a link between the nucleolus and cell division apparatus in surf clam (Spisula) oocytes. J Biol Chem. 2012 Feb 24;287(9):6702-13. Epub 2012 Jan 4. PubMed PMID: 22219192; PubMed Central PMCID: PMC3307295. Open Access Article
XYClone
Yes Bui HT, Kwon DN, Kang MH, Oh MH, Park MR, Park WJ, Paik SS, Van Thuan N, Kim JH. Epigenetic reprogramming in somatic cells induced by extract from germinal vesicle stage pig oocytes. Development. 2012 Dec;139(23):4330-40. doi: 10.1242/dev.086116. PubMed PMID: 23132243.
XYClone
Yes Jeon K, Lim H, Kim JH, Thuan NV, Park SH, Lim YM, Choi HY, Lee ER, Kim JH, Lee MS, Cho SG. Differentiation and transplantation of functional pancreatic beta cells generated from induced pluripotent stem cells derived from a type 1 diabetes mouse model. Stem Cells Dev. 2012 Apr 19. [Epub ahead of print]
XYClone
Yes Lee HS, Ma H, Cervera Juanes R, Tachibana M, Sparman M, Woodward J, Ramsey C, Xu J, Kang EJ, Amato P, Mair G, Steinborn R, Mitalipov S, Rapid Mitochondrial DNA Segregation in Primate Preimplantation Embryos Precedes Somatic and Germline Bottleneck, Cell Reports. Open Access Article
XYClone
Yes Lyons DC, Perry KJ, Lesoway MP, Henry JQ. Cleavage pattern and fate map of the mesentoblast, 4d, in the gastropod Crepidula: a hallmark of spiralian development. Evodevo. 2012 Sep 19;3(1):21. doi: 10.1186/2041-9139-3-21. PubMed PMID: 22992254. Open Access Article
XYClone
Yes Paull D, Emmanuele V, Weiss KA, Treff N, Stewart L, Hua H, Zimmer M, Kahler DJ, Goland RS, Noggle SA, Prosser R, Hirano M, Sauer MV, Egli D. Nuclear genome transfer in human oocytes eliminates mitochondrial DNA variants. Nature. 2012 Dec 19. doi: 10.1038/nature11800. [Epub ahead of print] PubMed PMID: 23254936.
XYClone
Yes Pernet, B, Amiel A, Seaver EC. Effects of maternal investment on larvae and juveniles of the annelid Capitella teleta determined by experimental reduction of embryo energy content. Invertebr Biol 2012 June 131(2): 1744-7410. doi:10.1111/j.1744-7410.2012.00263.x
XYClone
Yes Pina-Aguilar RE. El regreso del ovocito: de la olvidada transferencia citoplasmática a la actual transferencia del huso meiótico. Rev Mex Reprod. 2012; 4(3): 132-138. Open Access Article XYClone
Yes Reinholdt LG, Howell GR, Czechanski AM, Macalinao DG, MacNicoll KH, et al. (2012) Generating Embryonic Stem Cells from the Inbred Mouse Strain DBA/2J, a Model of Glaucoma and Other Complex Diseases. PLoS ONE 7(11): e50081. doi:10.1371/journal.pone.0050081 Open Access Article
XYClone
Yes Smits K, Govaere J, Hoogewijs M, Piepers S, Van Soom A. A pilot comparison of laser-assisted vs piezo drill ICSI for the in vitro production of horse embryos. Reprod Domest Anim. 2012 Feb;47(1):e1-3.
XYClone
Yes Tachibana M, Amato P, Sparman M, Woodward J, Sanchis DM, Ma H, Gutierrez NM, Tippner-Hedges R, Kang E, Lee HS, Ramsey C, Masterson K, Battaglia D, Lee D, Wu D, Jensen J, Patton P, Gokhale S, Stouffer R, Mitalipov S. Towards germline gene therapy of inherited mitochondrial diseases. Nature. 2012 Oct 24. doi: 10.1038/nature11647. [Epub ahead of print] PubMed PMID: 23103867.
XYClone
No Tachibana M, Ma H, Sparman ML, Lee HS, Ramsey CM, Woodward JS, Sritanaudomchai H, Masterson KR, Wolff EE, Jia Y, Mitalipov SM. X-chromosome inactivation in monkey embryos and pluripotent stem cells. Dev Biol. 2012 Nov 15;371(2):146-55. doi: 10.1016/j.ydbio.2012.08.009. Epub 2012 Aug 23. PubMed PMID: 22935618; PubMed Central PMCID: PMC3466365.
XYClone
Yes Tachibana M, Sparman M, Ramsey C, Ma H, Lee HS, Penedo MCT, Mitalipov S. Generation of Chimeric Rhesus Monkeys, Cell, , Available online 5 January 2012
XYClone
No Wolf XA, Klein T, Garcia R, Hyttel P, Serup P. Identification of a conserved cis-acting region driving expression of mouse Eomesodermin to the primitive streak, node, and definitive endoderm. Gene Expr Patterns. 2011 Jul 8. [Epub ahead of print] PubMed PMID: 21763783.
XYClone

Available? Reference
System
Yes Egli D, Chen AE, Saphier G, Ichida J, Fitzgerald C, Go KJ, Acevedo N, Patel J, Baetscher M, Kearns WG, Goland R, Leibel RL, Melton DA, Eggan K. Reprogramming within hours following nuclear transfer into mouse but not human zygotes. Nat Commun. 2011 Oct 4;2:488. doi: 10.1038/ncomms1503. PubMed PMID: 2197150 Open Access Article
XYClone
Yes Moawad AR, Choi I, Zhu J, Campbell KH. Ovine Oocytes Vitrified at Germinal Vesicle Stage as Cytoplast Recipients for Somatic Cell Nuclear Transfer (SCNT). Cell Reprogram. 2011 Aug;13(4):289-96. Epub 2011 Jun 30. PubMed PMID: 21718110.
XYClone
Yes Noggle S, Fung HL, Gore A, Martinez H, Satriani KC, Prosser R, Oum K, Paull D, Druckenmiller S, Freeby M, Greenberg E, Zhang K, Goland R, Sauer MV, Leibel RL, Egli D. Human oocytes reprogram somatic cells to a pluripotent state. Nature. 2011 Oct 5;478(7367):70-5. doi: 10.1038/nature10397. PubMed PMID: 21979046.
XYClone
Yes Pryor JH, Looney CR, Romo S, Kraemer DC, Long CR. Cryopreservation of in vitro produced bovine embryos: effects of lipid segregation and post-thaw laser assisted hatching. Theriogenology. 2011 Jan 1;75(1):24-33. Epub 2010 Sep 15. PubMed PMID: 20833420.
XYClone
Yes Scott BR. Development and permeability of equine blastocysts. A Thesis submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College. May 2011.
XYClone
Yes Sinko I, Katona RL. Transfer of Stem Cells Carrying Engineered Chromosomes with XY Clone Laser System. Methods Mol Biol. 2011;738:183-98. PubMed PMID: 21431728.
XYClone
No Siripattarapravat K, Cibelli JB. "Method for somatic cell nuclear transfer in zebrafish." The Zebrafish: Genetics, Genomics and Informatics, 3rd Edition. Eds., H. William Detrich, III, Monte Westerfield, Leonard I. Zon. Methods Cell Biol. 2011;104:209-17. PubMed PMID: 21924165
XYClone

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System
Yes Aguilar-Gallardo C, Poo M, Gomez E, Galan A, Sanchez E, Marques-Mari A, Ruiz V, Medrano J, Riboldi M, Valbuena D, Simon C. Derivation, characterization, differentiation, and registration of seven human embryonic stem cell lines (VAL-3, -4, -5, -6M, -7, -8, and -9) on human feeder. In Vitro Cell Dev Biol Anim. 2010 Apr;46(3-4):317-26. Epub 2010 Feb 26. PubMed PMID: 20186513.
XYClone
Yes Alliegro MA, Henry JJ, Alliegro MC. Rediscovery of the nucleolinus, a dynamic RNA-rich organelle associated with the nucleolus, spindle, and centrosomes. Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13718-23. Epub 2010 Jul 19. PubMed PMID: 20643950. Open Access Article 
XYClone
Yes Chiasson M. Laser-assisted zona pellucida hatching of frozen-thawed In vivo-produced bovine embryos. A Thesis submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College. December 2010.
XYClone
Yes Choi I, Campbell KH. Treatment of ovine oocytes with caffeine increases the accessibility of DNase I to the donor chromatin and reduces apoptosis in somatic cell nuclear transfer embryos. Reprod Fertil Dev. 2010;22(6):1000-14. PubMed PMID: 20591334
XYClone
No DeChiara TM, Poueymirou WT, Auerbach W, Frendewey D, Yancopoulos GD, Valenzuela DM. Producing fully ES cell-derived mice from eight-cell stage embryo injections. Methods Enzymol. 2010;476:285-94. PubMed PMID: 20691872.
XYClone
Yes Estrada J, Li P, Mir B. Multiorgan Engraftment of Human Somatic Cells in Swine Foetuses After Intra-Blastocyst Transplantation. Reprod Domest Anim. 2010 Nov 23. doi: 10.1111/j.1439-0531.2010.01718.x. [Epub ahead of print] PubMed PMID:21092066.
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Yes Sambasiva Rao B, Uma Mahesh Y, Lakshmikantan UR, Suman K, Venu Charan K, Shivaji S. Developmental Competence of Oocytes Recovered from Postmortem Ovaries of the Endangered Indian Blackbuck (Antilope cervicapra). J Reprod Dev. 2010 Aug 11. [Epub ahead of print] PubMed PMID: 20710122. Open Access Article
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Yes Rao BS, Mahesh YU, Suman K, Charan KV, Lakshmikantan U, Gibence HR, Shivaji S. Meiotic maturation of vitrified immature chousingha (Tetracerus quadricorni) oocytes recovered postmortem. Cryobiology. 2010 Dec 17. [Epub ahead of print] PubMed PMID: 21168399.
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Yes Tachibana M, Sparman M, Mitalipov S. Chromosome transfer in mature oocytes. Nat Protoc. 2010;5(6):1138-47. Epub 2010 May 27. PubMed PMID: 20539289 Open Access Article
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Yes Cervera RP, Martí-Gutiérrez N, Escorihuela E, Moreno R, Stojkovic M. Trichostatin A affects histone acetylation and gene expression in porcine somatic cell nucleus transfer embryos. Theriogenology. 2009 Nov;72(8):1097-110. Epub 2009 Sep 17. PubMed PMID: 19765811.
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Yes Chen AE, Egli D, Niakan K, Deng J, Akutsu H, Yamaki M, Cowan C, Fitz-Gerald C, Zhang K, Melton DA, Eggan K. Optimal timing of inner cell mass isolation increases the efficiency of human embryonic stem cell derivation and allows generation of sibling cell lines. Cell Stem Cell. 2009 Feb 6;4(2):103-6. PubMed PMID: 19200798. Open Access Article
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Yes Dechiara TM, Poueymirou WT, Auerbach W, Frendewey D, Yancopoulos GD, Valenzuela DM. VelociMouse: fully ES cell-derived F0-generation mice obtained from the injection of ES cells into eight-cell-stage embryos. Methods Mol Biol. 2009;530:311-24. PubMed PMID: 19266341.
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Yes Egli D, Sandler VM, Shinohara ML, Cantor H, Eggan K. Reprogramming after chromosome transfer into mouse blastomeres. Curr Biol. 2009 Aug 25;19(16):1403-9. Epub 2009 Aug 13. PubMed PMID: 19682906. Open Access Article
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Yes Huang KW. Archiving biomedical mouse models by ovary cryopreservation. 2009. Dissertation Utrecht University, Faculty of Veterinary Medicine. ISBN: 978-90-393-5208-3.
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Yes Kobolak J, Kiss K, Polgar Z, Mamo S, Rogel-Gaillard C, Tancos Z, Bock I, Baji AG, Tar K, Pirity MK, Dinnyes A. Promoter analysis of the rabbit POU5F1 gene and its expression in preimplantation stage embryos. BMC Mol Biol. 2009 Sep 4;10:88. PubMed PMID: 19732419; PubMed Central PMCID: PMC2751759. Open Access Article
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Yes Sato H, Amagai K, Shimizukawa R, Tamai Y. Stable generation of serum- and feeder-free embryonic stem cell-derived mice with full germline-competency by using a GSK3 specific inhibitor. Genesis. 2009 Jun;47(6):414-22. PubMed PMID: 19391115; PubMed Central PMCID: PMC2726955. Open Access Download
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Yes Siripattarapravat K, Pinmee B, Venta PJ, Chang CC, Cibelli JB. Somatic cell nuclear transfer in zebrafish. Nat Methods. 2009 Oct;6(10):733-5. Epub 2009 Aug 30. PubMed PMID: 19718031. Supplementary Data and Movies
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Yes Tachibana M, Sparman M, Sritanaudomchai H, Ma H, Clepper L, Woodward J, Li Y, Ramsey C, Kolotushkina O, Mitalipov S. Mitochondrial gene replacement in primate offspring and embryonic stem cells. Nature. 2009 Sep 17;461(7262):367-72. Epub 2009 Aug 26. PubMed PMID: 19710649; PubMed Central PMCID: PMC2774772. Open Access Article. Supplementary Data and Movie  

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Yes Hsiao EC, Yoshinaga Y, Nguyen TD, Musone SL, Kim JE, Swinton P, Espineda I, Manalac C, deJong PJ, Conklin BR. Marking embryonic stem cells with a 2A self-cleaving peptide: a NKX2-5 emerald GFP BAC reporter. PLoS One. 2008 Jul 2;3(7):e2532. PubMed PMID: 18596956; PubMed Central PMCID: PMC2430532. Open Access Article
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Yes Scherzer J, Fayrer-Hosken RA, Ray L, Hurley DJ, Heusner GL. Advancements in large animal embryo transfer and related biotechnologies. Reprod Domest Anim. 2008 Jun;43(3):371-6. Epub 2008 Jan 22. Review. PubMed PMID: 18226021.
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Yes Sidhu KS, Walke S, Tuch BE. Derivation and propagation of hESC under a therapeutic environment. Curr Protoc Stem Cell Biol. 2008 Jul;Chapter 1:Unit 1A.4. PubMed PMID: 18770626
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Yes Turetsky T, Aizenman E, Gil Y, Weinberg N, Shufaro Y, Revel A, Laufer N, Simon A, Abeliovich D, Reubinoff BE. Laser-assisted derivation of human embryonic stem cell lines from IVF embryos after preimplantation genetic diagnosis. Hum Reprod. 2008 Jan;23(1):46-53. Epub 2007 Nov 7. PubMed PMID: 17989069. Open Access Article
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Yes Yong, H-L. Effect of Making a Hole in Zona Pellucida by Laser on Hatching of Frozen-thawed ICR Mouse Embryos. Korean Journal of Embryo Transfer / v.23, no.1, 2008, pp.1-4. (Korean: Abstract in English) Open Access Article
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Yes Egli D, Rosains J, Birkhoff G, Eggan K. Developmental reprogramming after chromosome transfer into mitotic mouse zygotes. Nature. 2007 Jun 7;447(7145):679-85. PubMed PMID: 17554301
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Yes Hall VJ, Compton D, Stojkovic P, Nesbitt M, Herbert M, Murdoch A, Stojkovic M. Developmental competence of human in vitro aged oocytes as host cells for nuclear transfer. Hum Reprod. 2007 Jan;22(1):52-62. Epub 2006 Sep 6. PubMed PMID: 16957049. Open Access Article
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Yes Poueymirou WT, Auerbach W, Frendewey D, Hickey JF, Escaravage JM, Esau L, Doré AT, Stevens S, Adams NC, Dominguez MG, Gale NW, Yancopoulos GD, DeChiara TM, Valenzuela DM. F0 generation mice fully derived from gene-targeted embryonic stem cells allowing immediate phenotypic analyses. Nat Biotechnol. 2007 Jan;25(1):91-9. Epub 2006 Dec 24. PubMed PMID: 17187059
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Yes Tanaka N, Takeuchi T, Neri QV, Sills ES, Palermo GD. Laser-assisted blastocyst dissection and subsequent cultivation of embryonic stem cells in a serum/cell free culture system: applications and preliminary results in a murine model. J Transl Med. 2006 May 8;4:20. PubMed PMID: 16681851; PubMed Central PMCID: PMC1479373. Open Access Article
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Yes Hartshorn C, Anshelevich A, Wangh LJ. Laser zona drilling does not induce hsp70i transcription in blastomeres of eight-cell mouse embryos. Fertil Steril. 2005 Nov;84(5):1547-50. PubMed PMID: 16275269.
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