Why
Do Other Lasers Require Alignment On-site by the End
User?
The reason other laser systems need to be checked on-site for
alignment is that two or three separate components are used
to get the beam from the laser source to the sample. For example,
laser modules that are inserted into the fluorescent light port
also must have a dichroic mirror inserted in the filter cube
port, and the objective attached to the turret (see illustration
below). That makes three separate components that must stay
aligned at all times. Every time the module or filter cube is
removed and reinserted, or the microscope is moved, alignment
must be checked.
In systems
where physical laser alignment cannot be locked, for the highest
precision in physical beam alignment, there should be two available
methods of adjusting the laser beam: 1) angularly and, 2) translationally
(left to right, up and down).

In
the ZILOS-tk, these four components are housed in close proximity
within the same module. Thus, once
the laser is aligned and locked down, it stays aligned.
Why
Using a Pilot Laser Does Not Automatically Equal an Optically
Centered Laser Alignment (Physical Beam Alignment)
While
a pilot laser can act as an indicator of the laser target ("target
alignment"), simple use of a pilot laser does not
automatically mean that the laser beam is aligned both translationally
and angularly to the center axis of all optics
components (physical beam alignment).
Based on public claims that the path of the pilot laser replicates
that of the infrared laser, it follows that if the pilot laser
is off-axis, the drilling laser will also be off-axis. If a
pilot beam is off-axis, the diffraction rings will appear elliptical
upon defocusing in both directions. Diffraction ring images
representing varying degrees of off-axis pilot beam positioning
are shown below, with the more severe on the right.

A
pilot laser that is optically aligned to the axis will show
diffraction rings that remain circular throughout various focus
points (see image below). The laser is only properly aligned
if the diffraction rings maintain their circular appearance
upon defocusing in both directions.

For an
interactive presentation of the Airy diffraction pattern at
various depths of field, please see the Molecular
Expressions Optical Microscopy Primer (developed by the
National High Magnetic Field Laboratory at Florida State University).
A
wonderful interactive tutorial about the effects of an off-axis
beam as an optical aberration may also be found at Molecular
Expressions Optical Microscopy Primer. Take particular notice
of how off-axis light entering the lens makes the diffraction
rings elliptical. Only when the light is perfectly aligned through
the center of the optical axis are the diffraction rings circular.